Session - SC18

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Workshop: Fourth Computational Approaches for Cancer Workshop (CAFCW18)

Session Chairs

Frederick National Laboratory for Cancer Research

Nationwide Children's Hospital

Patricia Kovatch

Icahn School of Medicine at Mount Sinai

Event TypeWorkshop

Registration Categories

Tags

TimeSunday, November 11th9am - 5:30pm

LocationD165

Presentations

9:00am - 9:10am	Introduction – Fourth Computational Approaches for Cancer Workshop (CAFCW18) Organizers Eric Stahlberg Patricia Kovatch Thomas Barr Sunita Chandrasekaran
9:10am - 10:00am	Morning Keynote – Computational Approaches in Clinical Applications Presenter Ketan Paranjape
10:00am - 10:30am	Workshop Morning Break
10:30am - 11:00am	Developing a Reproducible WDL-Based Workflow for RNASeq Data Using Modular, Software Engineering-Based Approaches Author/Presenters Scott Cukras Fredrik Pettersson Yonghong Zhang Ling Cen Jamie Teer Steven Eschrich
11:00am - 11:15am	Safety, Reproducibility, Performance: Accelerating Cancer Drug Discovery with Cloud, ML, and HPC Technologies Author/Presenter Amanda J. Minnich
11:15am - 11:45am	The Gen3 Approach to Portability and Repeatability for Cancer Genomics Projects Author/Presenters Zac Flamig Yajing Tang Robert L. Grossman
11:45am - 12:00pm	Scalable Deep Ensemble Learning for Cancer Drug Discovery Author/Presenters Sam Ade Jacobs Tim Moon Brian C. Van Essen
12:00pm - 12:30pm	Panel Discussion: Reproducibility and Accessibility - Challenges and Opportunities
12:30pm - 2:00pm	Workshop Lunch (on your own)
2:00pm - 3:00pm	Afternoon Keynote – Genomic Profiling of Normal, Premalignant, and Heterogeneous Tissues in Cancer Patients Presenter Paul Scheet
3:00pm - 3:30pm	Workshop Afternoon Break
3:30pm - 4:00pm	HPC-Based Hyperparameter Search of MT-CNN for Information Extraction from Cancer Pathology Reports Author/Presenters Hong-Jun Yoon Mohammed Alawad Blair Christian Jacob Hinkle Arvind Ramanathan Georgia Tourassi
4:00pm - 4:15pm	Toward a Computational Simulation of Circulating Tumor Cell Transport in Vascular Geometries Author/Presenters John Gounley Erik W. Draeger Amanda Randles
4:15pm - 4:45pm	Hummingbird: Efficient Performance Prediction for Executing Genomics Applications in the Cloud Author/Presenters Utsab Ray Frank Mueller Amir Bahmani Vandhana Krishnan
4:45pm - 5:00pm	Toward a Pre-Cancer Image Atlas through Crowdsourcing and Machine Learning Author/Presenters Ashish Mahabal David Liu Luca Cinquini Daniel Crichton Heather Kincaid Sean Kelly Kristen Anton Maureen Colbert Christopher Amos Matthew Schabath Christos Patriotis Sudhir Srivastava
5:00pm - 5:30pm	Extending Frontiers for Computing in Cancer – Special Session